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Previous 		Contents: Volume 24, Number 15, 1 August 2008   [Index by Author] 
Down ORIGINAL PAPERS
     GENOME ANALYSIS
     SEQUENCE ANALYSIS
     GENE EXPRESSION
     SYSTEMS BIOLOGY
     DATA AND TEXT MINING
Down APPLICATIONS NOTE
     GENOME ANALYSIS
     STRUCTURAL BIOINFORMATICS
     GENE EXPRESSION
     GENETICS AND POPULATION ANALYSIS
     SYSTEMS BIOLOGY
     DATABASES AND ONTOLOGIES
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ORIGINAL PAPERS Back

GENOME ANALYSIS Back

Shuo Jiao and Shunpu Zhang
On correcting the overestimation of the permutation-based false discovery rate estimator
Bioinformatics Advance Access published on June 23, 2008
Bioinformatics 2008 24: 1655-1661; doi:10.1093/bioinformatics/btn310 [Abstract] [Print PDF] [References]   OPEN ACCESS ARTICLE  

SEQUENCE ANALYSIS Back

Håkan Viklund and Arne Elofsson
OCTOPUS: improving topology prediction by two-track ANN-based preference scores and an extended topological grammar
Bioinformatics Advance Access published on May 12, 2008
Bioinformatics 2008 24: 1662-1668; doi:10.1093/bioinformatics/btn221 [Abstract] [Print PDF] [References] [Supplementary Data] [Request Permissions]  

Kyoung-Jae Won, Albin Sandelin, Troels Torben Marstrand, and Anders Krogh
Modeling promoter grammars with evolving hidden Markov models
Bioinformatics Advance Access published on June 5, 2008
Bioinformatics 2008 24: 1669-1675; doi:10.1093/bioinformatics/btn254 [Abstract] [Print PDF] [References] [Supplementary Data] [Request Permissions]  

Tiago J. P. Sobreira and Arthur Gruber
Sequence-specific reconstruction from fragmentary databases using seed sequences: implementation and validation on SAGE, proteome and generic sequencing data
Bioinformatics Advance Access published on June 9, 2008
Bioinformatics 2008 24: 1676-1680; doi:10.1093/bioinformatics/btn283 [Abstract] [Print PDF] [References] [Supplementary Data] [Request Permissions]  

Kristoffer Forslund and Erik L. L. Sonnhammer
Predicting protein function from domain content
Bioinformatics Advance Access published on June 30, 2008
Bioinformatics 2008 24: 1681-1687; doi:10.1093/bioinformatics/btn312 [Abstract] [Print PDF] [References] [Supplementary Data] [Request Permissions]  

GENE EXPRESSION Back

R. Schachtner, D. Lutter, P. Knollmüller, A. M. Tomé, F. J. Theis, G. Schmitz, M. Stetter, P. Gómez Vilda, and E. W. Lang
Knowledge-based gene expression classification via matrix factorization
Bioinformatics Advance Access published on June 5, 2008
Bioinformatics 2008 24: 1688-1697; doi:10.1093/bioinformatics/btn245 [Abstract] [Print PDF] [References] [Supplementary Data]   OPEN ACCESS ARTICLE  

Anne-Laure Boulesteix, Christine Porzelius, and Martin Daumer
Microarray-based classification and clinical predictors: on combined classifiers and additional predictive value
Bioinformatics Advance Access published on June 9, 2008
Bioinformatics 2008 24: 1698-1706; doi:10.1093/bioinformatics/btn262 [Abstract] [Print PDF] [References] [Request Permissions]  

E. Purdom, K. M. Simpson, M. D. Robinson, J. G. Conboy, A. V. Lapuk, and T.P. Speed
FIRMA: a method for detection of alternative splicing from exon array data
Bioinformatics Advance Access published on June 23, 2008
Bioinformatics 2008 24: 1707-1714; doi:10.1093/bioinformatics/btn284 [Abstract] [Print PDF] [References] [Supplementary Data]   OPEN ACCESS ARTICLE  

SYSTEMS BIOLOGY Back

Francesco Pappalardo, Salvatore Musumeci, and Santo Motta
Modeling immune system control of atherogenesis
Bioinformatics Advance Access published on June 12, 2008
Bioinformatics 2008 24: 1715-1721; doi:10.1093/bioinformatics/btn306 [Abstract] [Print PDF] [References] [Request Permissions]  

DATA AND TEXT MINING Back

Derek Greene, Gerard Cagney, Nevan Krogan, and Pádraig Cunningham
Ensemble non-negative matrix factorization methods for clustering protein–protein interactions
Bioinformatics Advance Access published on June 12, 2008
Bioinformatics 2008 24: 1722-1728; doi:10.1093/bioinformatics/btn286 [Abstract] [Print PDF] [References] [Supplementary Data] [Request Permissions]  

APPLICATIONS NOTE Back

GENOME ANALYSIS Back

Anthony P. Fejes, Gordon Robertson, Mikhail Bilenky, Richard Varhol, Matthew Bainbridge, and Steven J. M. Jones
FindPeaks 3.1: a tool for identifying areas of enrichment from massively parallel short-read sequencing technology
Bioinformatics Advance Access published on July 3, 2008
Bioinformatics 2008 24: 1729-1730; doi:10.1093/bioinformatics/btn305 [Abstract] [Print PDF] [References]   OPEN ACCESS ARTICLE  

STRUCTURAL BIOINFORMATICS Back

J. Ramon Goñi, Carlos Fenollosa, Alberto Pérez, David Torrents, and Modesto Orozco
DNAlive: a tool for the physical analysis of DNA at the genomic scale
Bioinformatics Advance Access published on June 9, 2008
Bioinformatics 2008 24: 1731-1732; doi:10.1093/bioinformatics/btn259 [Abstract] [Print PDF] [References] [Supplementary Data] [Request Permissions]  

Yiqun Cao, Anna Charisi, Li-Chang Cheng, Tao Jiang, and Thomas Girke
ChemmineR: a compound mining framework for R
Bioinformatics Advance Access published on July 2, 2008
Bioinformatics 2008 24: 1733-1734; doi:10.1093/bioinformatics/btn307 [Abstract] [Print PDF] [References]   OPEN ACCESS ARTICLE  

GENE EXPRESSION Back

Carl Murie and Robert Nadon
A correction for estimating error when using the Local Pooled Error Statistical Test
Bioinformatics Advance Access published on May 1, 2008
Bioinformatics 2008 24: 1735-1736; doi:10.1093/bioinformatics/btn211 [Abstract] [Full Text] [Print PDF] [Request Permissions]  

GENETICS AND POPULATION ANALYSIS Back

Meizhuo Zhang, Rui Feng, Xiang Chen, Buqu Hu, and Heping Zhang
LOT: a tool for linkage analysis of ordinal traits for pedigree data
Bioinformatics Advance Access published on June 5, 2008
Bioinformatics 2008 24: 1737-1739; doi:10.1093/bioinformatics/btn258 [Abstract] [Print PDF] [References] [Request Permissions]  

SYSTEMS BIOLOGY Back

Marzio Pennisi, Roberto Catanuto, Francesco Pappalardo, and Santo Motta
Optimal vaccination schedules using simulated annealing
Bioinformatics Advance Access published on June 5, 2008
Bioinformatics 2008 24: 1740-1742; doi:10.1093/bioinformatics/btn260 [Abstract] [Print PDF] [References] [Request Permissions]  

DATABASES AND ONTOLOGIES Back

Johannes Goll, Seesandra V. Rajagopala, Shen C. Shiau, Hank Wu, Brian T. Lamb, and Peter Uetz
MPIDB: the microbial protein interaction database
Bioinformatics Advance Access published on June 13, 2008
Bioinformatics 2008 24: 1743-1744; doi:10.1093/bioinformatics/btn285 [Abstract] [Print PDF] [References] [Supplementary Data]   OPEN ACCESS ARTICLE  

To see an article, click its [Full Text] link. To review many abstracts, check the boxes to the left of the titles you want, and click the 'Get All Checked Abstract(s)' button. To see one abstract at a time, click its [Abstract] link.